# {py:mod}`ovo.app.components.molstar_custom_component.contigs_parser`

```{py:module} ovo.app.components.molstar_custom_component.contigs_parser
```

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser
:allowtitles:
```

## Module Contents

### Classes

````{list-table}
:class: autosummary longtable
:align: left

* - {py:obj}`ContigsParser <ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser>`
  - ```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser
    :summary:
    ```
````

### API

`````{py:class} ContigsParser
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser
```

````{py:method} get_chain_and_indices_fixed_region(region: str)
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.get_chain_and_indices_fixed_region

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.get_chain_and_indices_fixed_region
```

````

````{py:method} get_output_chain(has_generated_before_chain_break: bool)
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.get_output_chain

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.get_output_chain
```

````

````{py:method} parse_region_generated(region: str, last_parsed_res: int, has_generated_before_chain_break: bool)
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_region_generated

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_region_generated
```

````

````{py:method} parse_region_fixed_no_mapping(region: str)
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_region_fixed_no_mapping

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_region_fixed_no_mapping
```

````

````{py:method} parse_region_fixed(region: str, ref_indices: list[list[typing.Union[str, numpy.int64, bool]]], new_indices: list[list[typing.Union[str, numpy.int64, bool]]], has_generated_before_chain_break: bool)
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_region_fixed

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_region_fixed
```

````

````{py:method} parse_contigs_str(contigs_string: str = '', include_generated=False) -> list[ovo.app.components.molstar_custom_component.dataclasses.ContigSegment]
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_contigs_str

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_contigs_str
```

````

````{py:method} parse_contigs_trb(contigs_trb: str | dict = '') -> list[ovo.app.components.molstar_custom_component.dataclasses.ContigSegment]
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_contigs_trb

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser.parse_contigs_trb
```

````

````{py:method} _parse_contigs_with_tuples(contigs: str, mapped_tuples: list = [], reference_tuples: list = [], include_generated=True) -> list[ovo.app.components.molstar_custom_component.dataclasses.ContigSegment]
:canonical: ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser._parse_contigs_with_tuples

```{autodoc2-docstring} ovo.app.components.molstar_custom_component.contigs_parser.ContigsParser._parse_contigs_with_tuples
```

````

`````