`ovo.core.database.models_proteinqc`¶

Module Contents¶

Classes¶

`ProteinQCTool`
`ProteinQCWorkflow`

Data¶

`SEQ_COMPOSITION`
`ESM_1V`
`ESM_IF`
`DSSP`
`PEPPATCH`
`PROTEINSOL`
`PROTEINQC_TOOLS`
`PROTEINQC_TOOLS_BY_KEY`

API¶

class ovo.core.database.models_proteinqc.ProteinQCTool¶

name: str¶: None

tool_key: str¶: None

supports_conda: bool¶: False

supports_multichain: bool¶: False

ovo.core.database.models_proteinqc.SEQ_COMPOSITION¶: ‘ProteinQCTool(…)’

ovo.core.database.models_proteinqc.ESM_1V¶: ‘ProteinQCTool(…)’

ovo.core.database.models_proteinqc.ESM_IF¶: ‘ProteinQCTool(…)’

ovo.core.database.models_proteinqc.DSSP¶: ‘ProteinQCTool(…)’

ovo.core.database.models_proteinqc.PEPPATCH¶: ‘ProteinQCTool(…)’

ovo.core.database.models_proteinqc.PROTEINSOL¶: ‘ProteinQCTool(…)’

ovo.core.database.models_proteinqc.PROTEINQC_TOOLS¶: None

ovo.core.database.models_proteinqc.PROTEINQC_TOOLS_BY_KEY¶: None

class ovo.core.database.models_proteinqc.ProteinQCWorkflow¶

Bases: ovo.core.database.models.DescriptorWorkflow

tools: List[str]¶: None

get_pipeline_name() → str¶

prepare_params(workdir: str) → dict¶

process_results(job: ovo.core.database.DescriptorJob, callback: Callable = None) → list[ovo.core.database.models.Base]¶

validate()¶