ovo.core.utils.seq

Module Contents

Functions

align_protein_global
are_similar	Check if amino acid pair is considered similar based on hard-coded similar pairs.

Data

SIMILAR_PAIRS

API

ovo.core.utils.seq.align_protein_global(a: str, b: str) → Bio.Align.Alignment

ovo.core.utils.seq.SIMILAR_PAIRS

‘frozenset(…)’

ovo.core.utils.seq.are_similar(aa1: str, aa2: str) → bool

Check if amino acid pair is considered similar based on hard-coded similar pairs.

Parameters:

• aa1 – First amino acid

• aa2 – Second amino acid

Returns:

True if they are considered similar, else False